Potential energy scan with Psi4 continue

  23 Mar 2021

By Wen Xu

physics quantum chemistry potential energy surface

NH3 vs PH3

We all know in organic chemistry a carbon center can be chiral (or stero active). However, a nitrogen center can not be chiral. Why? It is because NR1R2R3 configuration can easier be converted to its mirror image under room temperate through inversion. This inversion happens on a fast time scale (ca. pico seconds)

However, if we replace the nitrogen with phosphorous, the P center could be chiral (or stero active). Why? Because the for PR1R2R3 to convert to its mirror image, it would require to overpass a much higher energy barrier than NR1R2R3.

Now let using quantum chemistry calculations to show that.

Below is the input for scanning the NH3 potential energy surface, by varying the angle between NH bond and the rotational axis of NH3

We need to add a dummy atom (ghost atom) as the reference in the Z-Matrix.


molecule nh3 {
  @H 
  N 1 R1
  H 2 R2 1 A
  H 2 R2 1 A 3 A1
  H 2 R2 1 A 3 -A1
}

Avals=range(10,170,2)

table=Table(rows=["A"], cols=["E(SCF)","E(SCS)","E(DFMP2)"])

set basis cc-pvdz

nh3.R1 = 1.0
nh3.R2 = 1.008
nh3.A1 = 120.0

for A in Avals:
    nh3.A = A
    energy('mp2')
    escf = get_variable('SCF TOTAL ENERGY')
    edfmp2 = get_variable('MP2 TOTAL ENERGY')
    escsmp2 = get_variable('SCS-MP2 TOTAL ENERGY')
    table[A] = [escf, escsmp2, edfmp2]

print(table)
relative=table.copy()
relative.absolute_to_relative()
print(relative)

The first @H is a dummy atom. So psi4 will put atomic orbital there, but will not put electrons and nuclear centered at that position.

Similar input file for PH3.

Results

Below are the potential energy surfaces for NH3 and PH3, by varying the angle between N(P)H with their rotation axis.

alt nh3 and ph3 pes

We can see clearly, the PH3 inversion energy barrier is higher than that of NH3.

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